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We will have a fix for configurations that don't define the Apache setting ServerRoot in the next release of csf.

The double slashes is not an issue.

The error is incorrect as it is referring to ip6tables instead of iptables, therefore is actually failing on the location or permissions of IPTABLES as defined in /etc/csf/csf.conf

This is down to the source Country Code databases, see:
viewtopic.php?f=6&t=11986

As you are using FTP over SSL/TLS you need to open a hole for PASV connections. See the section "13. A note about FTP Connection Issues" in /etc/csf/readme.txt

We will have a remedy for this in the next csf release.

Thank you for reporting this. We'll have a fix for it in the next release.

Those lines should be in csf.pignore not csf.ignore.

Which OS and OS version are you running, and which version of InterWorx?

will indicate whether there is an update. Lower the value in /etc/csf/version.txt to test.

We'll have a fix for this in the next release of csf. Thank you for reporting the issue.